Detailed information of SNP:
|
SNP ID:
sf1214646964(Gbrowse)
Chromosome: chr12 Position: 14646964 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 94.27% | 5.73% |
| All Indica | 798 | 98.37% | 1.63% |
| All Japonica | 494 | 89.27% | 10.73% |
| Aus | 65 | 83.08% | 16.92% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 91 | 67.03% | 32.97% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214646964 | G->C | LOC_Os12g25390(LOC_Os12g25390.1) | Non-Synonymous SNP |