Detailed information of SNP:
|
SNP ID:
sf1214653183(Gbrowse)
Chromosome: chr12 Position: 14653183 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 80.21% | 19.79% |
| All Indica | 797 | 74.03% | 25.97% |
| All Japonica | 495 | 88.89% | 11.11% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 60.70% | 39.30% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 334 | 96.71% | 3.29% |
| Tropical Japonica | 93 | 62.37% | 37.63% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214653183 | G->A | INTERGENIC | None |