Detailed information of SNP:
|
SNP ID:
sf1214654127(Gbrowse)
Chromosome: chr12 Position: 14654127 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 73.77% | 26.23% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 496 | 29.03% | 70.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 334 | 10.78% | 89.22% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214654127 | A->C | INTERGENIC | None |