Detailed information of SNP:
|
SNP ID:
sf1214654831(Gbrowse)
Chromosome: chr12 Position: 14654831 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 84.36% | 15.64% |
| All Indica | 799 | 74.84% | 25.16% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 59.47% | 40.53% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214654831 | T->C | INTERGENIC | None |