Detailed information of SNP:
|
SNP ID:
sf1214666455(Gbrowse)
Chromosome: chr12 Position: 14666455 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 87.20% | 12.80% |
| All Indica | 794 | 77.83% | 22.17% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 64.52% | 35.48% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 209 | 82.78% | 17.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214666455 | G->A | INTERGENIC | None |