Detailed information of SNP:
|
SNP ID:
sf1214671886(Gbrowse)
Chromosome: chr12 Position: 14671886 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1180 | 63.90% | 36.10% |
| All Indica | 688 | 53.20% | 46.80% |
| All Japonica | 439 | 82.23% | 17.77% |
| Aus | 21 | 47.62% | 52.38% |
| Indica I | 306 | 55.88% | 44.12% |
| Indica II | 192 | 41.15% | 58.85% |
| Indica Intermediate | 190 | 61.05% | 38.95% |
| Temperate Japonica | 322 | 94.10% | 5.90% |
| Tropical Japonica | 60 | 30.00% | 70.00% |
| Japonica Intermediate | 57 | 70.18% | 29.82% |
| Group VI/Aromatic | 3 | 33.33% | 66.67% |
| Intermediate | 29 | 55.17% | 44.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214671886 | T->C | INTERGENIC | None |