Detailed information of SNP:
|
SNP ID:
sf1214672005(Gbrowse)
Chromosome: chr12 Position: 14672005 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 66.64% | 33.36% |
| All Indica | 775 | 90.45% | 9.55% |
| All Japonica | 496 | 24.19% | 75.81% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 366 | 96.45% | 3.55% |
| Indica II | 210 | 91.90% | 8.10% |
| Indica Intermediate | 199 | 77.89% | 22.11% |
| Temperate Japonica | 334 | 10.18% | 89.82% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214672005 | A->T | INTERGENIC | None |