Detailed information of SNP:
|
SNP ID:
sf1214672267(Gbrowse)
Chromosome: chr12 Position: 14672267 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1350 | 66.74% | 33.26% |
| All Indica | 788 | 90.86% | 9.14% |
| All Japonica | 496 | 27.02% | 72.98% |
| Aus | 31 | 77.42% | 22.58% |
| Indica I | 369 | 93.22% | 6.78% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 207 | 85.99% | 14.01% |
| Temperate Japonica | 335 | 9.55% | 90.45% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 67 | 40.30% | 59.70% |
| Group VI/Aromatic | 1 | 100.00% | 0.00% |
| Intermediate | 34 | 76.47% | 23.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214672267 | G->A | INTERGENIC | None |