Detailed information of SNP:
|
SNP ID:
sf1214679728(Gbrowse)
Chromosome: chr12 Position: 14679728 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 64.43% | 35.57% |
| All Indica | 797 | 82.06% | 17.94% |
| All Japonica | 497 | 30.18% | 69.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 74.80% | 25.20% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 12.24% | 87.76% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214679728 | A->C | INTERGENIC | None |