Detailed information of SNP:
|
SNP ID:
sf1214690638(Gbrowse)
Chromosome: chr12 Position: 14690638 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 72.85% | 27.15% |
| All Indica | 798 | 72.18% | 27.82% |
| All Japonica | 497 | 86.12% | 13.88% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 59.73% | 40.27% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 210 | 77.62% | 22.38% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214690638 | A->G | INTERGENIC | None |