Detailed information of SNP:
|
SNP ID:
sf1214698952(Gbrowse)
Chromosome: chr12 Position: 14698952 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 69.45% | 30.55% |
| All Indica | 799 | 97.12% | 2.88% |
| All Japonica | 494 | 20.85% | 79.15% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 334 | 8.08% | 91.92% |
| Tropical Japonica | 93 | 58.06% | 41.94% |
| Japonica Intermediate | 67 | 32.84% | 67.16% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214698952 | A->G | INTERGENIC | None |