Detailed information of SNP:
|
SNP ID:
sf1214699156(Gbrowse)
Chromosome: chr12 Position: 14699156 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 93.30% | 6.70% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 484 | 81.40% | 18.60% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 323 | 85.14% | 14.86% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 67 | 73.13% | 26.87% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214699156 | C->G | INTERGENIC | None |