Detailed information of SNP:
|
SNP ID:
sf1214699550(Gbrowse)
Chromosome: chr12 Position: 14699550 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 65.30% | 34.70% |
| All Indica | 799 | 91.11% | 8.89% |
| All Japonica | 493 | 20.28% | 79.72% |
| Aus | 64 | 79.69% | 20.31% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 334 | 7.19% | 92.81% |
| Tropical Japonica | 92 | 58.70% | 41.30% |
| Japonica Intermediate | 67 | 32.84% | 67.16% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214699550 | T->C | INTERGENIC | None |