Detailed information of SNP:
|
SNP ID:
sf1214701104(Gbrowse)
Chromosome: chr12 Position: 14701104 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 94.39% | 5.61% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 489 | 84.46% | 15.54% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 328 | 87.80% | 12.20% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214701104 | C->T | INTERGENIC | None |