Detailed information of SNP:
|
SNP ID:
sf1214703625(Gbrowse)
Chromosome: chr12 Position: 14703625 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1257 | 60.86% | 39.14% |
| All Indica | 681 | 95.59% | 4.41% |
| All Japonica | 459 | 3.92% | 96.08% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 348 | 99.14% | 0.86% |
| Indica II | 151 | 94.04% | 5.96% |
| Indica Intermediate | 182 | 90.11% | 9.89% |
| Temperate Japonica | 321 | 1.87% | 98.13% |
| Tropical Japonica | 77 | 12.99% | 87.01% |
| Japonica Intermediate | 61 | 3.28% | 96.72% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214703625 | A->G | INTERGENIC | None |