Detailed information of SNP:
|
SNP ID:
sf1214717799(Gbrowse)
Chromosome: chr12 Position: 14717799 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 82.11% | 17.89% |
| All Indica | 787 | 78.53% | 21.47% |
| All Japonica | 494 | 85.02% | 14.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 89.81% | 10.19% |
| Indica II | 210 | 53.33% | 46.67% |
| Indica Intermediate | 204 | 83.82% | 16.18% |
| Temperate Japonica | 334 | 94.31% | 5.69% |
| Tropical Japonica | 93 | 58.06% | 41.94% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214717799 | G->A | INTERGENIC | None |