Detailed information of SNP:
|
SNP ID:
sf1214739580(Gbrowse)
Chromosome: chr12 Position: 14739580 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 76.02% | 23.98% |
| All Indica | 798 | 74.81% | 25.19% |
| All Japonica | 497 | 76.66% | 23.34% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 213 | 44.60% | 55.40% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 335 | 91.34% | 8.66% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214739580 | C->T | INTERGENIC | None |