Detailed information of SNP:
|
SNP ID:
sf1214758657(Gbrowse)
Chromosome: chr12 Position: 14758657 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1355 | 58.38% | 41.62% |
| All Indica | 745 | 78.93% | 21.07% |
| All Japonica | 492 | 21.54% | 78.46% |
| Aus | 64 | 81.25% | 18.75% |
| Indica I | 344 | 79.36% | 20.64% |
| Indica II | 202 | 84.65% | 15.35% |
| Indica Intermediate | 199 | 72.36% | 27.64% |
| Temperate Japonica | 332 | 7.53% | 92.47% |
| Tropical Japonica | 92 | 64.13% | 35.87% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214758657 | G->A | LOC_Os12g25500(LOC_Os12g25500.1) | Non-Synonymous SNP |