Detailed information of SNP:
|
SNP ID:
sf1214759822(Gbrowse)
Chromosome: chr12 Position: 14759822 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 96.37% | 3.63% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 485 | 93.81% | 6.19% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 332 | 96.69% | 3.31% |
| Tropical Japonica | 89 | 79.78% | 20.22% |
| Japonica Intermediate | 64 | 98.44% | 1.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214759822 | G->A | LOC_Os12g25510(LOC_Os12g25510.1) | Synonymous |