Detailed information of SNP:
|
SNP ID:
sf1214760757(Gbrowse)
Chromosome: chr12 Position: 14760757 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1263 | 64.92% | 35.08% |
| All Indica | 696 | 52.44% | 47.56% |
| All Japonica | 471 | 86.62% | 13.38% |
| Aus | 46 | 41.30% | 58.70% |
| Indica I | 323 | 49.85% | 50.15% |
| Indica II | 188 | 60.11% | 39.89% |
| Indica Intermediate | 185 | 49.19% | 50.81% |
| Temperate Japonica | 325 | 96.31% | 3.69% |
| Tropical Japonica | 80 | 55.00% | 45.00% |
| Japonica Intermediate | 66 | 77.27% | 22.73% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 38 | 57.89% | 42.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214760757 | T->C | LOC_Os12g25510(LOC_Os12g25510.1) | INTRON |