Detailed information of SNP:
|
SNP ID:
sf1214761195(Gbrowse)
Chromosome: chr12 Position: 14761195 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 69.61% | 30.39% |
| All Indica | 796 | 94.85% | 5.15% |
| All Japonica | 496 | 23.39% | 76.61% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 96.51% | 3.49% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 8.96% | 91.04% |
| Tropical Japonica | 93 | 67.74% | 32.26% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214761195 | G->C | LOC_Os12g25510(LOC_Os12g25510.1) | Non-Synonymous SNP |