Detailed information of SNP:
|
SNP ID:
sf1214761530(Gbrowse)
Chromosome: chr12 Position: 14761530 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 55.95% | 44.05% |
| All Indica | 795 | 71.32% | 28.68% |
| All Japonica | 497 | 23.74% | 76.26% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 373 | 58.18% | 41.82% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 210 | 72.38% | 27.62% |
| Temperate Japonica | 335 | 8.96% | 91.04% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214761530 | A->G | LOC_Os12g25510(LOC_Os12g25510.1) | Non-Synonymous SNP |