Detailed information of SNP:



SNP ID: sf1214761530(Gbrowse)

Chromosome: chr12

Position: 14761530
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1412 55.95% 44.05%
All Indica795 71.32% 28.68%
All Japonica497 23.74% 76.26%
Aus65 93.85% 6.15%
Indica I373 58.18% 41.82%
Indica II212 93.40% 6.60%
Indica Intermediate210 72.38% 27.62%
Temperate Japonica335 8.96% 91.04%
Tropical Japonica94 68.09% 31.91%
Japonica Intermediate68 35.29% 64.71%
Group VI/Aromatic14 92.86% 7.14%
Intermediate41 75.61% 24.39%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1214761530 A->G LOC_Os12g25510(LOC_Os12g25510.1) Non-Synonymous SNP