Detailed information of SNP:
|
SNP ID:
sf1214763056(Gbrowse)
Chromosome: chr12 Position: 14763056 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 94.14% | 5.86% |
| All Indica | 778 | 95.50% | 4.50% |
| All Japonica | 489 | 92.02% | 7.98% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 364 | 96.70% | 3.30% |
| Indica II | 209 | 93.78% | 6.22% |
| Indica Intermediate | 205 | 95.12% | 4.88% |
| Temperate Japonica | 330 | 95.76% | 4.24% |
| Tropical Japonica | 91 | 80.22% | 19.78% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214763056 | G->A | LOC_Os12g25510(LOC_Os12g25510.1) | Non-Synonymous SNP |