Detailed information of SNP:
|
SNP ID:
sf1214772422(Gbrowse)
Chromosome: chr12 Position: 14772422 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 68.85% | 31.15% |
| All Indica | 799 | 93.12% | 6.88% |
| All Japonica | 497 | 24.14% | 75.86% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 8.96% | 91.04% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214772422 | A->T | INTERGENIC | None |