Detailed information of SNP:
|
SNP ID:
sf1214776586(Gbrowse)
Chromosome: chr12 Position: 14776586 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 95.88% | 4.12% |
| All Indica | 796 | 99.62% | 0.38% |
| All Japonica | 465 | 88.82% | 11.18% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 309 | 89.97% | 10.03% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 63 | 85.71% | 14.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214776586 | C->T | INTERGENIC | None |