Detailed information of SNP:
|
SNP ID:
sf1214776591(Gbrowse)
Chromosome: chr12 Position: 14776591 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 69.31% | 30.69% |
| All Indica | 795 | 93.71% | 6.29% |
| All Japonica | 496 | 24.40% | 75.60% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 93.03% | 6.97% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 209 | 90.91% | 9.09% |
| Temperate Japonica | 335 | 9.25% | 90.75% |
| Tropical Japonica | 93 | 69.89% | 30.11% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214776591 | T->C | INTERGENIC | None |