Detailed information of SNP:
|
SNP ID:
sf1214778298(Gbrowse)
Chromosome: chr12 Position: 14778298 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1310 | 76.64% | 23.36% |
| All Indica | 770 | 94.81% | 5.19% |
| All Japonica | 420 | 38.33% | 61.67% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 355 | 97.18% | 2.82% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 203 | 92.61% | 7.39% |
| Temperate Japonica | 272 | 22.06% | 77.94% |
| Tropical Japonica | 88 | 80.68% | 19.32% |
| Japonica Intermediate | 60 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214778298 | A->G | LOC_Os12g25530(LOC_Os12g25530.1) | Non-Synonymous SNP |