Detailed information of SNP:
|
SNP ID:
sf1214778433(Gbrowse)
Chromosome: chr12 Position: 14778433 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1394 | 56.10% | 43.90% |
| All Indica | 780 | 81.54% | 18.46% |
| All Japonica | 492 | 9.76% | 90.24% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 364 | 79.40% | 20.60% |
| Indica II | 211 | 88.63% | 11.37% |
| Indica Intermediate | 205 | 78.05% | 21.95% |
| Temperate Japonica | 333 | 2.70% | 97.30% |
| Tropical Japonica | 92 | 28.26% | 71.74% |
| Japonica Intermediate | 67 | 19.40% | 80.60% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214778433 | C->A | LOC_Os12g25530(LOC_Os12g25530.1) | Non-Synonymous SNP |