Detailed information of SNP:
|
SNP ID:
sf1214782329(Gbrowse)
Chromosome: chr12 Position: 14782329 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 55.66% | 44.34% |
| All Indica | 778 | 81.62% | 18.38% |
| All Japonica | 497 | 8.65% | 91.35% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 360 | 76.67% | 23.33% |
| Indica II | 210 | 88.57% | 11.43% |
| Indica Intermediate | 208 | 83.17% | 16.83% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214782329 | G->A | INTERGENIC | None |