Detailed information of SNP:



SNP ID: sf1214783185(Gbrowse)

Chromosome: chr12

Position: 14783185
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1411 65.56% 34.44%
All Indica792 88.89% 11.11%
All Japonica496 22.78% 77.22%
Aus67 91.04% 8.96%
Indica I368 86.14% 13.86%
Indica II213 93.90% 6.10%
Indica Intermediate211 88.63% 11.37%
Temperate Japonica335 9.55% 90.45%
Tropical Japonica93 64.52% 35.48%
Japonica Intermediate68 30.88% 69.12%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 78.57% 21.43%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1214783185 A->G LOC_Os12g25550(LOC_Os12g25550.1) Non-Synonymous SNP