Detailed information of SNP:
|
SNP ID:
sf1214783185(Gbrowse)
Chromosome: chr12 Position: 14783185 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 65.56% | 34.44% |
| All Indica | 792 | 88.89% | 11.11% |
| All Japonica | 496 | 22.78% | 77.22% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 368 | 86.14% | 13.86% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 9.55% | 90.45% |
| Tropical Japonica | 93 | 64.52% | 35.48% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214783185 | A->G | LOC_Os12g25550(LOC_Os12g25550.1) | Non-Synonymous SNP |