Detailed information of SNP:
|
SNP ID:
sf1214785241(Gbrowse)
Chromosome: chr12 Position: 14785241 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1308 | 93.35% | 6.65% |
| All Indica | 700 | 89.86% | 10.14% |
| All Japonica | 488 | 96.93% | 3.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 341 | 96.48% | 3.52% |
| Indica II | 173 | 82.66% | 17.34% |
| Indica Intermediate | 186 | 84.41% | 15.59% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 88 | 89.77% | 10.23% |
| Japonica Intermediate | 65 | 95.38% | 4.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214785241 | G->A | LOC_Os12g25550(LOC_Os12g25550.1) | INTRON |