Detailed information of SNP:
|
SNP ID:
sf1214791650(Gbrowse)
Chromosome: chr12 Position: 14791650 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1360 | 57.28% | 42.72% |
| All Indica | 745 | 76.91% | 23.09% |
| All Japonica | 494 | 20.85% | 79.15% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 355 | 69.01% | 30.99% |
| Indica II | 195 | 91.28% | 8.72% |
| Indica Intermediate | 195 | 76.92% | 23.08% |
| Temperate Japonica | 335 | 8.96% | 91.04% |
| Tropical Japonica | 92 | 55.43% | 44.57% |
| Japonica Intermediate | 67 | 32.84% | 67.16% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214791650 | C->T | INTERGENIC | None |