Detailed information of SNP:
|
SNP ID:
sf1214793335(Gbrowse)
Chromosome: chr12 Position: 14793335 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 51.60% | 48.40% |
| All Indica | 791 | 27.94% | 72.06% |
| All Japonica | 490 | 95.10% | 4.90% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 372 | 25.81% | 74.19% |
| Indica II | 210 | 30.00% | 70.00% |
| Indica Intermediate | 209 | 29.67% | 70.33% |
| Temperate Japonica | 333 | 97.30% | 2.70% |
| Tropical Japonica | 89 | 91.01% | 8.99% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214793335 | A->G | INTERGENIC | None |