Detailed information of SNP:
|
SNP ID:
sf1214796435(Gbrowse)
Chromosome: chr12 Position: 14796435 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 58.35% | 41.65% |
| All Indica | 784 | 88.78% | 11.22% |
| All Japonica | 490 | 4.90% | 95.10% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 367 | 90.19% | 9.81% |
| Indica II | 209 | 87.08% | 12.92% |
| Indica Intermediate | 208 | 87.98% | 12.02% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 87 | 14.94% | 85.06% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214796435 | C->T | LOC_Os12g25570(LOC_Os12g25570.1) | Synonymous |