Detailed information of SNP:
|
SNP ID:
sf1214796439(Gbrowse)
Chromosome: chr12 Position: 14796439 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 57.97% | 42.03% |
| All Indica | 780 | 88.72% | 11.28% |
| All Japonica | 489 | 4.29% | 95.71% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 366 | 90.98% | 9.02% |
| Indica II | 206 | 85.44% | 14.56% |
| Indica Intermediate | 208 | 87.98% | 12.02% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 88 | 13.64% | 86.36% |
| Japonica Intermediate | 66 | 4.55% | 95.45% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214796439 | T->C | LOC_Os12g25570(LOC_Os12g25570.1) | Non-Synonymous SNP |