Detailed information of SNP:
|
SNP ID:
sf1214796567(Gbrowse)
Chromosome: chr12 Position: 14796567 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 69.01% | 30.99% |
| All Indica | 791 | 96.33% | 3.67% |
| All Japonica | 495 | 20.61% | 79.39% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 373 | 97.32% | 2.68% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 207 | 93.72% | 6.28% |
| Temperate Japonica | 335 | 7.46% | 92.54% |
| Tropical Japonica | 92 | 60.87% | 39.13% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214796567 | A->G | LOC_Os12g25570(LOC_Os12g25570.1) | Synonymous |