Detailed information of SNP:
|
SNP ID:
sf1214797044(Gbrowse)
Chromosome: chr12 Position: 14797044 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 62.38% | 37.62% |
| All Indica | 792 | 91.04% | 8.96% |
| All Japonica | 492 | 11.38% | 88.62% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 370 | 91.89% | 8.11% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 334 | 2.40% | 97.60% |
| Tropical Japonica | 92 | 41.30% | 58.70% |
| Japonica Intermediate | 66 | 15.15% | 84.85% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214797044 | T->A | INTERGENIC | None |