Detailed information of SNP:
|
SNP ID:
sf1214797126(Gbrowse)
Chromosome: chr12 Position: 14797126 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1394 | 57.25% | 42.75% |
| All Indica | 778 | 86.76% | 13.24% |
| All Japonica | 494 | 6.07% | 93.93% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 368 | 88.04% | 11.96% |
| Indica II | 206 | 87.38% | 12.62% |
| Indica Intermediate | 204 | 83.82% | 16.18% |
| Temperate Japonica | 334 | 2.69% | 97.31% |
| Tropical Japonica | 92 | 18.48% | 81.52% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214797126 | G->T | INTERGENIC | None |