Detailed information of SNP:
|
SNP ID:
sf1214797394(Gbrowse)
Chromosome: chr12 Position: 14797394 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 64.88% | 35.12% |
| All Indica | 799 | 94.62% | 5.38% |
| All Japonica | 493 | 11.97% | 88.03% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 334 | 4.79% | 95.21% |
| Tropical Japonica | 92 | 35.87% | 64.13% |
| Japonica Intermediate | 67 | 14.93% | 85.07% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214797394 | A->G | LOC_Os12g25580(LOC_Os12g25580.1) | Synonymous |