Detailed information of SNP:
|
SNP ID:
sf1214797511(Gbrowse)
Chromosome: chr12 Position: 14797511 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1387 | 63.16% | 36.84% |
| All Indica | 783 | 93.36% | 6.64% |
| All Japonica | 482 | 8.92% | 91.08% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 367 | 95.64% | 4.36% |
| Indica II | 210 | 93.33% | 6.67% |
| Indica Intermediate | 206 | 89.32% | 10.68% |
| Temperate Japonica | 325 | 2.15% | 97.85% |
| Tropical Japonica | 91 | 30.77% | 69.23% |
| Japonica Intermediate | 66 | 12.12% | 87.88% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214797511 | C->T | LOC_Os12g25580(LOC_Os12g25580.1) | Synonymous |