Detailed information of SNP:
|
SNP ID:
sf1214798766(Gbrowse)
Chromosome: chr12 Position: 14798766 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1351 | 52.18% | 47.82% |
| All Indica | 745 | 81.07% | 18.93% |
| All Japonica | 490 | 3.47% | 96.53% |
| Aus | 65 | 81.54% | 18.46% |
| Indica I | 340 | 82.65% | 17.35% |
| Indica II | 208 | 80.77% | 19.23% |
| Indica Intermediate | 197 | 78.68% | 21.32% |
| Temperate Japonica | 332 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 13.98% | 86.02% |
| Japonica Intermediate | 65 | 3.08% | 96.92% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 37 | 59.46% | 40.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214798766 | G->A | LOC_Os12g25580(LOC_Os12g25580.1) | INTRON |