Detailed information of SNP:
|
SNP ID:
sf1214800139(Gbrowse)
Chromosome: chr12 Position: 14800139 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 59.65% | 40.35% |
| All Indica | 778 | 86.76% | 13.24% |
| All Japonica | 490 | 11.02% | 88.98% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 368 | 86.41% | 13.59% |
| Indica II | 203 | 87.19% | 12.81% |
| Indica Intermediate | 207 | 86.96% | 13.04% |
| Temperate Japonica | 334 | 3.29% | 96.71% |
| Tropical Japonica | 88 | 37.50% | 62.50% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214800139 | T->C | LOC_Os12g25580(LOC_Os12g25580.1) | Non-Synonymous SNP |