Detailed information of SNP:
|
SNP ID:
sf1214800266(Gbrowse)
Chromosome: chr12 Position: 14800266 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 61.50% | 38.50% |
| All Indica | 784 | 88.39% | 11.61% |
| All Japonica | 493 | 12.58% | 87.42% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 368 | 87.77% | 12.23% |
| Indica II | 209 | 88.52% | 11.48% |
| Indica Intermediate | 207 | 89.37% | 10.63% |
| Temperate Japonica | 333 | 3.30% | 96.70% |
| Tropical Japonica | 93 | 43.01% | 56.99% |
| Japonica Intermediate | 67 | 16.42% | 83.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214800266 | T->C | LOC_Os12g25580(LOC_Os12g25580.1) | INTRON |