Detailed information of SNP:
|
SNP ID:
sf1214801516(Gbrowse)
Chromosome: chr12 Position: 14801516 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 64.12% | 35.88% |
| All Indica | 788 | 91.88% | 8.12% |
| All Japonica | 490 | 14.08% | 85.92% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 367 | 92.10% | 7.90% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 208 | 89.42% | 10.58% |
| Temperate Japonica | 334 | 3.89% | 96.11% |
| Tropical Japonica | 90 | 46.67% | 53.33% |
| Japonica Intermediate | 66 | 21.21% | 78.79% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214801516 | G->A | LOC_Os12g25580(LOC_Os12g25580.1) | Synonymous |