Detailed information of SNP:
|
SNP ID:
sf1214812949(Gbrowse)
Chromosome: chr12 Position: 14812949 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1360 | 76.69% | 23.31% |
| All Indica | 751 | 63.91% | 36.09% |
| All Japonica | 491 | 95.93% | 4.07% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 342 | 57.31% | 42.69% |
| Indica II | 208 | 80.77% | 19.23% |
| Indica Intermediate | 201 | 57.71% | 42.29% |
| Temperate Japonica | 330 | 97.27% | 2.73% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214812949 | T->C | INTERGENIC | None |