Detailed information of SNP:
|
SNP ID:
sf1214819649(Gbrowse)
Chromosome: chr12 Position: 14819649 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1358 | 93.67% | 6.33% |
| All Indica | 745 | 89.40% | 10.60% |
| All Japonica | 491 | 99.39% | 0.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 353 | 90.93% | 9.07% |
| Indica II | 186 | 84.95% | 15.05% |
| Indica Intermediate | 206 | 90.78% | 9.22% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 97.80% | 2.20% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214819649 | T->A | LOC_Os12g25610(LOC_Os12g25610.1) | Non-Synonymous SNP |