Detailed information of SNP:
|
SNP ID:
sf1214820234(Gbrowse)
Chromosome: chr12 Position: 14820234 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 74.91% | 25.09% |
| All Indica | 797 | 61.98% | 38.02% |
| All Japonica | 497 | 91.15% | 8.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 74.40% | 25.60% |
| Indica II | 212 | 30.66% | 69.34% |
| Indica Intermediate | 210 | 71.43% | 28.57% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214820234 | G->A | LOC_Os12g25610(LOC_Os12g25610.1) | INTRON |