Detailed information of SNP:
|
SNP ID:
sf1214820247(Gbrowse)
Chromosome: chr12 Position: 14820247 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 74.82% | 25.18% |
| All Indica | 798 | 62.28% | 37.72% |
| All Japonica | 497 | 90.95% | 9.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 74.67% | 25.33% |
| Indica II | 212 | 30.19% | 69.81% |
| Indica Intermediate | 211 | 72.51% | 27.49% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214820247 | C->T | LOC_Os12g25610(LOC_Os12g25610.1) | INTRON |