Detailed information of SNP:
|
SNP ID:
sf1214820529(Gbrowse)
Chromosome: chr12 Position: 14820529 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1368 | 67.32% | 32.68% |
| All Indica | 751 | 92.01% | 7.99% |
| All Japonica | 496 | 24.19% | 75.81% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 350 | 93.71% | 6.29% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 190 | 84.21% | 15.79% |
| Temperate Japonica | 335 | 9.85% | 90.15% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 67 | 32.84% | 67.16% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214820529 | G->A | LOC_Os12g25610(LOC_Os12g25610.1) | INTRON |