Detailed information of SNP:
|
SNP ID:
sf1214820640(Gbrowse)
Chromosome: chr12 Position: 14820640 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1258 | 92.61% | 7.39% |
| All Indica | 661 | 88.05% | 11.95% |
| All Japonica | 477 | 98.11% | 1.89% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 324 | 92.28% | 7.72% |
| Indica II | 144 | 78.47% | 21.53% |
| Indica Intermediate | 193 | 88.08% | 11.92% |
| Temperate Japonica | 331 | 99.09% | 0.91% |
| Tropical Japonica | 82 | 93.90% | 6.10% |
| Japonica Intermediate | 64 | 98.44% | 1.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214820640 | C->T | INTERGENIC | None |